YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996740, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.91
Transmembrane Helix	14	35	0.90
Cytoplasmic	36	52	0.94
Transmembrane Helix	53	74	0.89
Non-Cytoplasmic	75	94	0.88
Transmembrane Helix	95	117	0.92
Cytoplasmic	118	125	0.90
Transmembrane Helix	126	146	0.95
Non-Cytoplasmic	147	184	0.91
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	215	0.89
Transmembrane Helix	216	235	0.89
Non-Cytoplasmic	236	321	0.96
Transmembrane Helix	322	342	0.94
Cytoplasmic	343	352	0.86
Transmembrane Helix	353	374	0.94
Non-Cytoplasmic	375	403	0.92
Transmembrane Helix	404	426	0.86
Cytoplasmic	427	450	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLTLSRLQ FAATTMFHFI FVPLTLGLSV LTAYMETRYV RTGDETYLKM AKFWGKLFLI  60
   61 NFALGVVTGI TQEFQFGMNW AEYSRYVGDI FGAPLAIEAT VAFFLESVFI GVWIFGWNKV 120
  121 SKATHAVAIW LVAIGTNLSA LWILLANGWM QKPVGYVLRN GRAEMVDFLA VVTNPYGIIK 180
  181 FVHTLTSGYM VAAFFVMGIS AWHLLRKNRI DFFVRSFRMA ATFGFVAAIL VFLSGDFHAV 240
  241 EIAKTQPTKF AAMESVWETQ KGVGMNLILL PDPQNECNAV ERLCIPNMVS MLAFHTPDAE 300
  301 IKGLKDFPKE LRPPVQPTFW SFRLMVGLGT FMTLAALAGV ILSRMKNLEN RTLFLRVMLL 360
  361 ALPLPYIAAQ LGWIVAELGR QPWIVYGVLK TADGVSKAVT TPQVVGSLVG FTLIYSLLGA 420
  421 IDIYLLAKYA RKGPDDDLSG IIKPATVKGA