YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996722, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.90
Transmembrane Helix	12	35	0.90
Cytoplasmic	36	41	0.92
Transmembrane Helix	42	62	0.92
Non-Cytoplasmic	63	72	0.75
Transmembrane Helix	73	95	0.91
Cytoplasmic	96	115	0.94
Transmembrane Helix	116	149	0.78
Non-Cytoplasmic	150	153	0.54
Transmembrane Helix	154	187	0.75
Cytoplasmic	188	196	0.56
Transmembrane Helix	197	219	0.85
Non-Cytoplasmic	220	225	0.45
Transmembrane Helix	226	245	0.91
Cytoplasmic	246	250	0.46
Transmembrane Helix	251	272	0.83
Non-Cytoplasmic	273	301	0.58
Transmembrane Helix	302	318	0.63
Cytoplasmic	319	465	0.94
Transmembrane Helix	466	490	0.86
Non-Cytoplasmic	491	504	0.84
Transmembrane Helix	505	529	0.81
Cytoplasmic	530	536	0.74
Transmembrane Helix	537	557	0.88
Non-Cytoplasmic	558	595	0.73
Transmembrane Helix	596	613	0.57
Cytoplasmic	614	624	0.62
Transmembrane Helix	625	644	0.91
Non-Cytoplasmic	645	649	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWIQVYTPV AGSLGLSALV AAIPLVVIFV CLALFKMKAH KAGLLALASA MLIAITVWGM  60
   61 PAKLAGLATA QGAAFGLFPV FYIVITTIFL YNITVKGGQF EIIRASLAGV TADRRLQALL 120
  121 IAFCFGAFIE GAAGFGTPVA IAGATLAGLG FQPLYAAGVC LVANTAPVAF GAIGIPIVAL 180
  181 AGVMGYGDDG MMKLSTMVGR QLPFISVIIP FYVIMIMVGW KKTIEILPAI IVCGVTFALS 240
  241 QWATATYLGP YLPDVTASLA SIIALVLLLR VWQPKTIYTF AHEAPVTGAT EHHYTTGEVF 300
  301 RAWSPYLALT VMVLLWGIPS IKTVLDKSTV EIEVKGLHNM IVKKVAKPED TLTKIAAASA 360
  361 EIDRQLTLLS PADPKQAAIA AKLMELKAFE TQLAAVEQGL VGQGAVLTDE RLKACDIVSK 420
  421 KMAETQKLCK ELVKTAAVPA NQFKPLDKAL ADHLPLKVAA KYKFNFMSAA GTAILIAAFL 480
  481 SALICGVGFA DTFRILGKTL YDMRFPALTV ASVLGLAYVM NASGMTNCLG LIFTKTGHWF 540
  541 PFIAPFLGWL GVFLTGSDTS SNVLFGGLQK ATAEQLGISP ILTGAANTSG GVMGKMISPQ 600
  601 SLAVATAATG MVGEEGTLFR FTLKHSIFLT ILVGIIVYLQ AYVLQWMIP