YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983495, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPRLLKLID SVVGRTAAAI IPPPSLVLQP HLPKSILVIR PGGIGDAALL APALHALQRS  60
   61 YPGVSIDILA ERRNAGAFAL CPGLRSVSRY DVPAEFFPVL RSSYDVVIDT EQWHRLSAVV 120
  121 ARIVRAGIKI GFATNERRRL FTHPIPYEQD DYEADSFMRL LTPLGIRGEG EAECSFLAVP 180
  181 ARDAELVDQL LGGLKGRRFV ALFPGASIAE RRWGAERFAS LAALLVQRGI GVVVVGGESE 240
  241 RAAGRTVEAA GGLSLCGRTG LAATAAVIGR SALLVSGDSG ILHIAVGLGI PTVSLFGPGR 300
  301 AKKWAPRNGY HTVINKELPC SPCTTFGYTP KCPGNARCMA DITVDEVKGA VLAVLEKIIS 360
  361 HPK

Type	Start	End	Confidence
Cytoplasmic	1	250	0.55
Transmembrane Helix	251	269	0.57
Non-Cytoplasmic	270	279	0.73
Transmembrane Helix	280	299	0.77
Cytoplasmic	300	363	0.80