YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983483, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	35	0.90
Non-Cytoplasmic	36	41	0.73
Transmembrane Helix	42	62	0.85
Cytoplasmic	63	81	0.85
Transmembrane Helix	82	104	0.91
Non-Cytoplasmic	105	110	0.63
Transmembrane Helix	111	128	0.85
Cytoplasmic	129	132	0.76
Transmembrane Helix	133	152	0.76
Non-Cytoplasmic	153	158	0.67
Transmembrane Helix	159	178	0.93
Cytoplasmic	179	198	0.90
Transmembrane Helix	199	221	0.84
Non-Cytoplasmic	222	228	0.73
Transmembrane Helix	229	247	0.91
Cytoplasmic	248	260	0.86
Transmembrane Helix	261	283	0.84
Non-Cytoplasmic	284	284	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSFQAFLR ICRPLQWLKN LMLFFPPFLS GTIFTPEVAV KGIPAFSAFC LASSAGYILN  60
   61 DIMDSEQDRL HPTKRFRPLP SGVVSPAVAT ALAGFLVLAG IGVAAITQSP RFLLFLLLYL 120
  121 LVTAIYSLKV KDIPLLDVFC VATGFIIRLE AGGEAFAVPI SSWLFLSVFL LALFLSIGKR 180
  181 LTEKHNLGDG AGLHRKSLAG YPDGFLEGAM YLTGGAVLVT YSMYTLSRSH LFYTVPLCCF 240
  241 GLLRYILRVK SGQSGDPTES LLKDIPLLLV SLAWAAIIGW RLYF