YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996535, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYRDSWFHT VFWKRFRRNR FALAGGVVVV VLFAISFLAP YIAPWDPDAI DAYRVLLPPS  60
   61 AEHWFGTDEL GRDVFTRVIY GARISLKVGF VSVGIAVVIG TVLGLVSGFY GGLVDTIIMR 120
  121 FVDIMLCFPT FFLILAVIAF LEPSIWYIMA IIGLTGWMGV ARLVRAEVLS LRERDFVLAA 180
  181 RALGASDVRI LLRHVLPNAV SPVLVSATLG VAGAILTESA LSFLGIGVQP PTPSWGNILT 240
  241 SGKDYIEFAW WLSLFPGGAI LVTVLAYNLL GEGIRDALDP RV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	87	0.98
Transmembrane Helix	88	111	0.89
Cytoplasmic	112	120	0.72
Transmembrane Helix	121	140	0.94
Non-Cytoplasmic	141	144	0.85
Transmembrane Helix	145	164	0.95
Cytoplasmic	165	198	0.90
Transmembrane Helix	199	226	0.77
Non-Cytoplasmic	227	247	0.91
Transmembrane Helix	248	271	0.90
Cytoplasmic	272	282	0.94