YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983393, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.91
Transmembrane Helix	11	30	0.94
Non-Cytoplasmic	31	37	0.76
Transmembrane Helix	38	56	0.93
Cytoplasmic	57	68	0.89
Transmembrane Helix	69	91	0.90
Non-Cytoplasmic	92	97	0.81
Transmembrane Helix	98	119	0.94
Cytoplasmic	120	126	0.89
Transmembrane Helix	127	149	0.87
Non-Cytoplasmic	150	160	0.82
Transmembrane Helix	161	184	0.84
Cytoplasmic	185	199	0.91
Transmembrane Helix	200	223	0.87
Non-Cytoplasmic	224	229	0.88
Transmembrane Helix	230	252	0.87
Cytoplasmic	253	261	0.75
Transmembrane Helix	262	284	0.74
Non-Cytoplasmic	285	290	0.62
Transmembrane Helix	291	312	0.73
Cytoplasmic	313	331	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQLLSRLNK NLVLTIPAMM AAGFVFGLVT ETGFLKELII PFTFLMVYPM MVTLKLKKVL  60
   61 EGGDGKAQLF TQFINFAVVP FVAFGLGRLF FADRPYMALG LLLAALVPTS GMTISWTGFA 120
  121 RGNLEAAVKM TVVGLILGSI ATPFYVQALM GAHVEVDMTG IMKQIAVIVF LPMAVGYATQ 180
  181 RYLIAKHGQK GFQEQWAPRF PCLSTLGVLG IVFIAIALKA QAIAARPQDL LAILLPLAIL 240
  241 YGINYSLSTV VGRLFLPRGD AIALAYGTVM RNLSIALAVA MNAFGKAGSD AALVIALAYI 300
  301 IQVQSAAWYV KFTGTLFGEA PAPSCPAPRR N