YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACCA_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFEKPVVEL EKKVQELAEL AGTNAELAGE VTKLEKKVDR MREVIFSNLS RWQTVQVARH  60
   61 IERPFTLDYL NLIFTDFTEL HGDRLFGDDH AIVAGLAKLD GEPVVVIGHQ KGRDTKEKVY 120
  121 RNFGMPNPEG YRKALRIMEL AERFRLPIIT FVDTPGAFPG IGAEERGQAE AIARNLREMA 180
  181 ALTVPIIVVV TGEGGSGGAL AIAVGDRVLM LQYSIYAVIS PEGCAAILWS DGTKGEQAAE 240
  241 ALKLTAKDLK ELEVIDEIVP EPLGGAHRDH EAMARTLHEA IARQLKELKA IPAEQLVEER 300
  301 YQKFRKMSRF IEG

Type	Start	End	Confidence
Cytoplasmic	1	180	0.52
Transmembrane Helix	181	202	0.52
Non-Cytoplasmic	203	313	0.68