YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996450, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSIRTRTE PAPVRWALTA GALLFLGLFL FVPLAAVFAQ ALEKGWGAYL AAIREPDALA  60
   61 AVKLTLVTAA ISVPLNLVFG VVAAWAIAKF QFRGKQLLIT LIDLPFSVSP VISGLIYVLL 120
  121 FGLQGWLGPW LQDHDAKIIF AVPGIVLATV FVTFPFVARE LIPLMEAQGT DEEEAAITLG 180
  181 ANGFQTFWRV TLPNIKWGLL YGVILCNARA MGEFGAVSVV SGHIRGETNT IPLHVEILYN 240
  241 EYNYAAAFAV ASLLALLALV TLVLKSVVEW RMRADA

Type	Start	End	Confidence
Cytoplasmic	1	15	0.91
Transmembrane Helix	16	39	0.85
Non-Cytoplasmic	40	65	0.90
Transmembrane Helix	66	88	0.91
Cytoplasmic	89	98	0.88
Transmembrane Helix	99	121	0.88
Non-Cytoplasmic	122	137	0.81
Transmembrane Helix	138	158	0.95
Cytoplasmic	159	196	0.95
Transmembrane Helix	197	217	0.84
Non-Cytoplasmic	218	243	0.88
Transmembrane Helix	244	264	0.95
Cytoplasmic	265	276	0.87