YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996449, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGLRDGVKS AAPALGLCKG PTTMATRPIT RTTVIPGFGP ALGYTVFYLS LVVLLPLSAL  60
   61 AVKTASLTWG EFLATVAAPR VLASYRVTFG AALAAAGVNA VFGLLVAWVL VRYRVPGKRL 120
  121 IDALVDLPFA LPTAVAGITL SSVYAANGWI GRFLEPRGIE VAFTPLGIFV AMTFIGLPFV 180
  181 VRTVQPVLEE LEEEIEEAAA CLGATRWQTF RRVLFPELFP AALTGFALAF ARGVGEYGSI 240
  241 IFIAGNMPMV SEITPLLIIT KLEQYDYAGA TAIATVMLLF SFLMLLAVNL LQKWSRRHAA 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	40	0.78
Transmembrane Helix	41	62	0.82
Non-Cytoplasmic	63	88	0.73
Transmembrane Helix	89	111	0.92
Cytoplasmic	112	123	0.77
Transmembrane Helix	124	146	0.85
Non-Cytoplasmic	147	160	0.71
Transmembrane Helix	161	181	0.93
Cytoplasmic	182	212	0.83
Transmembrane Helix	213	234	0.78
Non-Cytoplasmic	235	267	0.63
Transmembrane Helix	268	291	0.89
Cytoplasmic	292	300	0.83