YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983297, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNFASPHD RDLDERVRPP GWINPSPAPR YDLVVVGAGT AGLVCAAGAA GLGARVALVE  60
   61 RHRLGGDCLN YGCVPSKALI RAARAAHDAG NGAPFGVTGC HGTGVDGAAV MERMRRLRAE 120
  121 IGRHDAAVRF RDLGVHVFFG QGSFISRNAL EVDGRRLNFV HAAVCTGARA AAPPVPGLAE 180
  181 AGYLTNETIF SLATLPARLA VIGGGPIGCE LAQAAARLGS SVTVIEAAPE ILPREDTDAA 240
  241 ALVRHALERD RVSFLTAAAV VGVERRSGAR TLIVRQGDQS HEVTADEILV GAGRTPNIEG 300
  301 LGLERAGIVA DPLRGVRVND RLRTDNPRVY AAGDICSPYR FTHAADAMAR IVVANALFGA 360
  361 RQRFSTQIIP WCTYTDPEVA HVGLYEREAG ERGLAVDTLT VPLTEVDRAL LDGEDEGFAR 420
  421 VHLKRGTDRI VGATIVARHA GEMLNELTLA MSAGLGLSAI GRSIHPYPTQ AEAIKKLADA 480
  481 WNRTRLTPGV KRLMGIMLTL RRLWR

Type	Start	End	Confidence
Cytoplasmic	1	32	0.48
Transmembrane Helix	33	54	0.69
Non-Cytoplasmic	55	505	0.80