YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39983262, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIESALRE LNRLDLLAGG NSAVHRLDPR AKVFVTFAFI VAVVSLGRYE LAALVPFAVF  60
   61 PVALAASAGL PATVILRKLL LVLPFAVVVG LFNPLLDRQP LLALGPLVIS GGWISFLSII 120
  121 VRSLLTVGAA VVLVAVTGFS GICMALERFG VPRPFVVQLL FLYRYLFVLA DEGGRMVRAR 180
  181 ELRTFSGRGR GLKAYSALVG SLLLRTWDRA ERIHMAMLSR GFNGQFHVRR EIRPGRADWI 240
  241 FTAGWCALFV LFRLVNIPHL LGGLVTGGYP

Type	Start	End	Confidence
Cytoplasmic	1	32	0.91
Transmembrane Helix	33	52	0.82
Non-Cytoplasmic	53	57	0.51
Transmembrane Helix	58	92	0.67
Cytoplasmic	93	100	0.56
Transmembrane Helix	101	121	0.81
Non-Cytoplasmic	122	124	0.55
Transmembrane Helix	125	146	0.86
Cytoplasmic	147	238	0.83
Transmembrane Helix	239	257	0.95
Non-Cytoplasmic	258	270	0.80