YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996278, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFTSSVGR KVLMAITGQF MVLFVIVHML GNSSIFIPGG INAYAEHLHA LPPLVWAFRL  60
   61 VMLVAAGIHI LFGIQLSLEN RAANPDTYAV KNYKKATMGS LSMLYTGLLL LSFIIYHLLH 120
  121 FTIRATPDIK LGVDSLGRFD VFGMVTNSFS HGIIAFIYIA AMVVLFLHLS HGIQSFFQTM 180
  181 GWNNDKSLPV FSKIGMIAAV VLLLGYATIP FVIVTGILKG

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	37	0.77
Non-Cytoplasmic	38	54	0.84
Transmembrane Helix	55	76	0.91
Cytoplasmic	77	97	0.92
Transmembrane Helix	98	119	0.90
Non-Cytoplasmic	120	148	0.93
Transmembrane Helix	149	170	0.90
Cytoplasmic	171	189	0.88
Transmembrane Helix	190	214	0.86
Non-Cytoplasmic	215	220	0.80