YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996200, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNKHMNTSS PDTTLSLTEC ISSAEASRRL AHKRSRHLKE RLVEFVLFLA AFSSVATTFA  60
   61 IVAILVYESI PLFKHVSLVE FLTDPQWTPL FDDAHFGIMP LVSGTLVTTG VALSVCIPMG 120
  121 TIIAIYLSEF APHKVRETVK PFLELLGAVP TVVFGYFALI VVTPLLQKVM PDLPGFNMLS 180
  181 AGLVMGIMII PYVSSVSEDA MRAVPMHLRE GSYAMGATRF QTAVRVVVPS AFSGIAAAYI 240
  241 LGISRAVGET MIVAIAAGMQ PTLTWKPTES ASTISSYIVQ VALGDLPHGS IGYQSIFAAG 300
  301 LTLMVMTLVF NIIGYWLKKR FREVY

Type	Start	End	Confidence
Cytoplasmic	1	42	0.98
Transmembrane Helix	43	66	0.92
Non-Cytoplasmic	67	103	0.90
Transmembrane Helix	104	127	0.90
Cytoplasmic	128	141	0.92
Transmembrane Helix	142	166	0.85
Non-Cytoplasmic	167	174	0.87
Transmembrane Helix	175	196	0.88
Cytoplasmic	197	221	0.92
Transmembrane Helix	222	243	0.82
Non-Cytoplasmic	244	294	0.88
Transmembrane Helix	295	317	0.91
Cytoplasmic	318	325	0.98