YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996199, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQSVTEIRR LIARHKFWDY VFAIVGLICL LVGILTLMGL FAQLVADGAP RLKPHFFTSF  60
   61 PSRFPEEAGI LSAWVGTILV MLVTAFVAVP LGVAAGVYLE EYAPKNWLTA IIEINVTNLA 120
  121 GVPSIVFGLL ALGLFVYQLN FGQSILSAGL TLALLILPIV IVATRESLRA VPGSIREAAY 180
  181 ALGATRWQMV SNHVLPYSSS GILTGVIIGL SRAIGETAPV ITIGALTFIA FLPHSPISGQ 240
  241 FPFISFEWLK DPFTVMPIQM FNWTSRPEEE FQLNAAAAGV VLLAMTLAMN AVAIFLRYHI 300
  301 RKKIKW

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	42	0.93
Non-Cytoplasmic	43	73	0.90
Transmembrane Helix	74	98	0.88
Cytoplasmic	99	113	0.87
Transmembrane Helix	114	136	0.89
Non-Cytoplasmic	137	143	0.75
Transmembrane Helix	144	164	0.91
Cytoplasmic	165	216	0.81
Transmembrane Helix	217	237	0.82
Non-Cytoplasmic	238	274	0.90
Transmembrane Helix	275	296	0.93
Cytoplasmic	297	306	0.84