YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996130, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSVALVQ QSCTADKDLN LAKSIENIRK ASVLGAKLVV LQELHTGPYF CQNEDTAHFD  60
   61 LAEPIPGPTT ELLGGVAKEF GVVLVSSLFE RRAPGLYHNT AVVFEKDGSM AGTYRKMHIP 120
  121 DDPGYYEKFY FTPGDLGFEP IRTSVGKLGV LVCWDQWYPE AARLMALAGA DLLIYPTAIG 180
  181 WDPRDDDDEK IRQKEAWITI QRGHAVANGI PVVSVNRVGH ESDPSGVLPG SQFWGSSFVA 240
  241 GPQGEILAQA SNDGEELLIT ELDLARSEAV RRIWPFLRDR RIDAYGDLLR RYRD

Type	Start	End	Confidence
Signal Peptide	1	15	0.91
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	294	0.99