YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39996122, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.64
Transmembrane Helix	19	39	0.90
Non-Cytoplasmic	40	48	0.46
Transmembrane Helix	49	68	0.90
Cytoplasmic	69	73	0.50
Transmembrane Helix	74	94	0.55
Non-Cytoplasmic	95	97	0.63
Transmembrane Helix	98	118	0.90
Cytoplasmic	119	127	0.83
Transmembrane Helix	128	147	0.91
Non-Cytoplasmic	148	165	0.78
Transmembrane Helix	166	185	0.93
Cytoplasmic	186	192	0.80
Transmembrane Helix	193	213	0.94
Non-Cytoplasmic	214	240	0.89
Transmembrane Helix	241	263	0.89
Cytoplasmic	264	316	0.74
Transmembrane Helix	317	338	0.87
Non-Cytoplasmic	339	343	0.43
Transmembrane Helix	344	361	0.79
Cytoplasmic	362	371	0.48
Transmembrane Helix	372	397	0.80
Non-Cytoplasmic	398	409	0.53
Transmembrane Helix	410	431	0.89
Cytoplasmic	432	433	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHFFQFERY NTTYRKETVA GITTFLTMAY IIIVNPAILE AAGIPRGPST TATIVAAVFG  60
   61 TVVMALYANR PFAIAPYMSE NAFIAFTVVK VLGYSWQTAL GAVFVAGVLF TVLTVFKVRS 120
  121 WLAEAIPLSL KCAFAVGIGL FLTFIGLNET GLVTLGVPGA PVKMGNIASP SVLLAVFGYL 180
  181 LTVFLMTRKI HGAIVIGIVA TTVLSVACGV TPMPTEFVSM PPDLSPILFQ LNIGDALDIR 240
  241 FFPVVLTIFI MAFLDTVGTL IGLSMRADLL DEKGNLPEIE KPMLADALAT TVAPLLGTTT 300
  301 TGAYIESATG IEEGGRTGFT ALVVAGLFLM SLFFAPLFTI VPPHAYGIAL IVIGSFMIEP 360
  361 LRRIDFEDFT ELVPAFLTIV LMIFTYNIGV GMSTGLLTYP LLKTAAGKRH QVSAGMWVLA 420
  421 GLAVLLFVFF PKM