YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982649, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	39	0.96
Non-Cytoplasmic	40	59	0.81
Transmembrane Helix	60	80	0.94
Cytoplasmic	81	90	0.78
Transmembrane Helix	91	111	0.93
Non-Cytoplasmic	112	129	0.89
Transmembrane Helix	130	150	0.93
Cytoplasmic	151	169	0.84
Transmembrane Helix	170	193	0.82
Non-Cytoplasmic	194	208	0.91
Transmembrane Helix	209	230	0.90
Cytoplasmic	231	248	0.83
Transmembrane Helix	249	268	0.90
Non-Cytoplasmic	269	277	0.80
Transmembrane Helix	278	299	0.93
Cytoplasmic	300	310	0.87
Transmembrane Helix	311	333	0.85
Non-Cytoplasmic	334	344	0.86
Transmembrane Helix	345	366	0.88
Cytoplasmic	367	401	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAARIVINE IKGYHRFIKF LMVLVGAAAV ASAVRFIFGL GATTNLNDLY PWGLWISFDV  60
   61 VTAVPLAAGA FTIGIVAHVF HIKKLEPLVR PAIVTGFLGY SLVCVGLLLD LGQPQRGPYV 120
  121 LFNWNVHSPM FEVSMCVMAY TTVLFLEFLH PVSERFGWHI PLRLLRTLEL PFAILAAMIS 180
  181 TLHQSTLGTF FLIAVDKLHN LWYNPLLPLQ FWLSAIFTGL SIVIFEASLV HKYMGQPDES 240
  241 DLLATLTKII PWIMGVYIAV KAYALAFLSH GPLFDRPVLT ALFSVEVIVG LLIPFAMFLT 300
  301 KRIRTDKQMQ LRAASLVIVG LILNRFNVSM FAMHQPGQPV YFPNFIESVV TIGIIAAHIL 360
  361 FFVLIAKYFP IFEHHPEATD YTIPDRFRKI EKHGHGTASE A