YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995884, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGAIDYSK TKTFLIDTTK CTGCRGCQVA CKQWNQLKAE NTTFFTGEGY QNPPGMSEFT  60
   61 FTRVKFKDYQ KHGQNEFAFY KEMCMHCNDP ACASVCPVGA FEKTAEGPVV YHSKKCIGCR 120
  121 FCMVACPFGI PKYEWSKAFP LVKKCTGCYS RVKNGLDPAC ATACPTAITY GPRDEMIKEA 180
  181 EKRMSARPDR YVKVVYGKEE AGGTTVLYLT QQPLDELGFK PVTKRPLPSY TWQALRLVPG 240
  241 IFLTVGGTLS LITWFQHRKD RVRKEEEEQK NRKEGNQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	233	0.89
Transmembrane Helix	234	255	0.86
Cytoplasmic	256	277	0.82