YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982641, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTTQFKAL VVEKTADKQF VREVRQRSID DLPPGDLVVR VHYSSLNYKD ALSATGHPGV  60
   61 TRQFPHTPGI DAAGEVVACD SGAFAPGDRV IVTGYDLGME TDGGFGQYIR IPSAWAVPLP 120
  121 EGLSLRESMA LGTAGLTAAL SVLGLERAGV TPDRGEILVT GATGGVGSIA VAILAAAGYR 180
  181 VTASTGKEFE EEYLRELGAT EVIGREELTA GAEKALLAER WAGAVDVVGG PTLAAVLKSV 240
  241 KYGGVVTCCG LVGSPDLPVN VYPFILRGVS LLGIDSVQAS PGIRREVWQR LAGAWKPAGL 300
  301 AGMVTECSLQ GLEVMIQTIL HGGITGRVVV NLLES

Type	Start	End	Confidence
Cytoplasmic	1	128	0.72
Transmembrane Helix	129	150	0.68
Non-Cytoplasmic	151	156	0.71
Transmembrane Helix	157	179	0.81
Cytoplasmic	180	335	0.60