YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982612, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.71
Transmembrane Helix	27	47	0.93
Non-Cytoplasmic	48	62	0.87
Transmembrane Helix	63	83	0.95
Cytoplasmic	84	93	0.74
Transmembrane Helix	94	111	0.95
Non-Cytoplasmic	112	116	0.72
Transmembrane Helix	117	136	0.89
Cytoplasmic	137	147	0.81
Transmembrane Helix	148	172	0.90
Non-Cytoplasmic	173	193	0.88
Transmembrane Helix	194	214	0.91
Cytoplasmic	215	228	0.76
Transmembrane Helix	229	250	0.92
Non-Cytoplasmic	251	261	0.83
Transmembrane Helix	262	284	0.89
Cytoplasmic	285	296	0.73
Transmembrane Helix	297	323	0.75
Non-Cytoplasmic	324	325	0.49
Transmembrane Helix	326	340	0.61
Cytoplasmic	341	355	0.63
Transmembrane Helix	356	378	0.82
Non-Cytoplasmic	379	398	0.69
Transmembrane Helix	399	423	0.87
Cytoplasmic	424	438	0.70
Transmembrane Helix	439	459	0.92
Non-Cytoplasmic	460	478	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTAAVLLPL VGALVAWIVP DNRLRPLVLP AVAVPHFLLT LALLAWTPPP SPQGWIFLDP  60
   61 LGKIVLLCIS TLFLICAVYA VGYLAYRRDR SNRVLCMGLL ACLSAMTLVT ASQHLGLLWV 120
  121 AVETTTVTMA PLIYFNRNAR SIEATWKYLL ICSVGIALAL LGLFFLAYAT LVAHRDATLL 180
  181 LGPILASARE LNPGWLHASF IFMLVGFGSK MGIAPLHSWK PDAYGEAPGL VGALLAGGLV 240
  241 NCAFLAILRV YQISLASGGE YLFFQKALLT MGLISMGLAA VFMARQADFK RMLAYSSVEH 300
  301 VGILAVALGL GKGALFGALF HLLNNGLTKG VLFLSSGNIH RSFNSKSTEV VRGALARLPW 360
  361 SAGLFLAGFI AITGSPPFSP FVSEFSIVSS AFVEGRYLVG GLFLFFLAVI FIGMALTVLP 420
  421 LVMGVPPADA ERTDYRDRLL TVGPPLALLG LILMLGVWLP EPLLRLLGEG AALLEAKP