YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982575, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQASVYVA MNWLAVCCYV VATVLNASGI IFRKAVVEQR SYWPLWLGLA VHSVSLVYWW  60
   61 RVVGHGPYMA PSEVLLSDAW IAMVLFLGFQ RVFPRIRPTS LIVVPLVFLM VALANFYNPG 120
  121 IRSLPPTFSS IWLVLHISFY KIALGALIIA LAFSIFYLLK ARPAPPDWLR RLPDLEDLDL 180
  181 HAYRFAGFGF IFWAIGMLAG SIWAYKSWGR YWGWDPVETW SLITWLIFGT YLHLRRFFRM 240
  241 GGRAAAWFFI FGFIVALVAL FASSHMGTSI HSEYFQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.90
Transmembrane Helix	9	32	0.87
Cytoplasmic	33	41	0.92
Transmembrane Helix	42	62	0.93
Non-Cytoplasmic	63	68	0.88
Transmembrane Helix	69	89	0.86
Cytoplasmic	90	98	0.73
Transmembrane Helix	99	119	0.90
Non-Cytoplasmic	120	136	0.92
Transmembrane Helix	137	159	0.92
Cytoplasmic	160	179	0.96
Transmembrane Helix	180	204	0.90
Non-Cytoplasmic	205	215	0.87
Transmembrane Helix	216	234	0.90
Cytoplasmic	235	244	0.81
Transmembrane Helix	245	266	0.92
Non-Cytoplasmic	267	276	0.90