YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERIALPRRT LGARRREVPV TPDTLLPLLA VLPPLAYGLL ALFCARAWFG RQRPGPGHTP  60
   61 PVTILKPVKG MDAESFENFA SFCRQEYGGP WQMLFACASA DDPVIPVIRR LMAEFPDRDI 120
  121 DLVVDGTIHG PNYKVSNLIN AFPRARHDIL IVCDSDIRVT SDYLGEVTAP FADPAVGLVT 180
  181 SLYRSPGVRG AATALEAMGF TVEMVPNVMV AQRLEGLSFA LGASMAVRRT ALESIGGFPA 240
  241 LTHYLADDYQ LGNKIHRAGW RLELSDCFVE SVMHRENLTT VLSRQLRWCR TMRASRPGGY 300
  301 LGSGITQPVP LACLALLVSG CSAAGWGAVI LLYLTRALVA VTFSRRYLRD GIFPRWLWLL 360
  361 PLRDILAFAT WALSFAGNRV RWRGNLFRLL PGGKIVEIG

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.50
Transmembrane Helix	25	49	0.59
Cytoplasmic	50	297	0.52
Transmembrane Helix	298	318	0.55
Non-Cytoplasmic	319	319	0.22
Transmembrane Helix	320	335	0.84
Cytoplasmic	336	355	0.56
Transmembrane Helix	356	377	0.83
Non-Cytoplasmic	378	399	0.70