YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982500, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	28	0.90
Non-Cytoplasmic	29	34	0.79
Transmembrane Helix	35	55	0.86
Cytoplasmic	56	74	0.80
Transmembrane Helix	75	98	0.82
Non-Cytoplasmic	99	107	0.70
Transmembrane Helix	108	131	0.91
Cytoplasmic	132	139	0.82
Transmembrane Helix	140	159	0.93
Non-Cytoplasmic	160	165	0.84
Transmembrane Helix	166	186	0.94
Cytoplasmic	187	251	0.80
Transmembrane Helix	252	268	0.52
Non-Cytoplasmic	269	286	0.57
Transmembrane Helix	287	311	0.81
Cytoplasmic	312	321	0.58
Transmembrane Helix	322	347	0.84
Non-Cytoplasmic	348	365	0.67
Transmembrane Helix	366	392	0.81
Cytoplasmic	393	407	0.78
Transmembrane Helix	408	431	0.88
Non-Cytoplasmic	432	436	0.76
Transmembrane Helix	437	457	0.91
Cytoplasmic	458	467	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDGKLTFRA VAEAVALLLG AASMIYMSRV VGPEYVGFSA ATSAVLLLLT RFADGGLTAL  60
   61 SSQRLARDDD TLGALLALTV PPKIVLSCAV IAATLLVVRF AGIDPRLAYF LSTAVFLIFF 120
  121 EVFSPAWVFV ALGEINTASF IRVAQSSIYA LVVFAFIRAP LDWQKLPYIM VLNSALGCVL 180
  181 ALLFLGRHRV RALDRRQFGS TYGRKIRQAF AESRHFLKAD LSLYVFTTSD RLILYYFATP 240
  241 HAVGIYEAAY KIINPFYAIS SIVTPTMFRP LAQSFKQGTP AAVLSRFTFL MLVGTVPLGF 300
  301 FLLLFSESII ITLYGPSFSE SIACLQVLGF AITLGYAAGA IVLPFSAWNM AREYGATMTY 360
  361 GNIFNVLLNI ALIPSLGGVG AALSTVAAKL AVALAAYRHF RNVTDYPILS DLLLFAVMAC 420
  421 VPLLLVLALG LAVENAVILM TVYAASYAVL VLVLVRTRYS RLWKDAV