YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.94
Transmembrane Helix	6	26	0.91
Cytoplasmic	27	39	0.91
Transmembrane Helix	40	64	0.82
Non-Cytoplasmic	65	72	0.74
Transmembrane Helix	73	94	0.91
Cytoplasmic	95	115	0.91
Transmembrane Helix	116	136	0.88
Non-Cytoplasmic	137	153	0.77
Transmembrane Helix	154	175	0.91
Cytoplasmic	176	182	0.85
Transmembrane Helix	183	203	0.93
Non-Cytoplasmic	204	234	0.92
Transmembrane Helix	235	257	0.89
Cytoplasmic	258	270	0.88
Transmembrane Helix	271	294	0.87
Non-Cytoplasmic	295	333	0.94
Transmembrane Helix	334	356	0.95
Cytoplasmic	357	376	0.91
Transmembrane Helix	377	396	0.96
Non-Cytoplasmic	397	404	0.74
Transmembrane Helix	405	427	0.92
Cytoplasmic	428	434	0.87
Transmembrane Helix	435	456	0.92
Non-Cytoplasmic	457	466	0.69
Transmembrane Helix	467	487	0.94
Cytoplasmic	488	507	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDANLVPLL IVTAALATFI ITGLRARARE AGDYGFGGRY IGRIGGGAAI ASNWMSAASF  60
   61 LGMGGLLYLQ GYYALAYVIG WTGGYVLLLV LMAGQIRRFG KYTAPDFVGD RYASPGARLI 120
  121 SAAISITISV IYCTAQFKGI GMLFGWLFAT DYRTGVILGA TVAVGYVILS GMLGVARNQQ 180
  181 LQYTLLIVSF ILPLMALAHK LGYFWVLPQF GYGVAIQDLK REFGINFAAP FASAGLFQWV 240
  241 ALCFTLMVGT AGLPHVLSRF YVVPNIRDAR WSLVWGLFFI ALIYWSAPAY AVFARLLEAR 300
  301 SGMAPPPVAA GKMADIIVIK TAVMGGLPSW MIGILAAGAM SAAFFTVAGL LITGAASLSH 360
  361 DIYYRLINPR ASEGSKMALA KGAVVVLAAI VLAIALNPPG LIAEITAVAF ALAGNTIFPA 420
  421 FLLGIWWSRA NRHGVIAGML TGVLITFSTP LFGGLVPAVA KVFPLTSSAL IGAPLVIGVM 480
  481 IVVSLLTPPP PEAVRRFLAE QVHGHMD