YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995595, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHADSHLDRS ITGRLKYAIA LTALTLVAEI VGGIWTNSLA LLSDAAHVFL DLFALVLSLA  60
   61 AIKLASYPAS DTKTFGWHRA EVFASFINGA TVFLMALGIF YEAVGRLMNP EAVKSLPMLL 120
  121 IATLGLVMNL ISATALHGHS HDDLNVRSAF LHVVGDAAAS VGVIVGGLIM YFTGWYVLDA 180
  181 LISIGIGCVI FAGSWRVLRE AAHILLEGVP RGMSTQQVAN EMAGVEGVNA VHQMNIWTIC 240
  241 SHILALSAHV DVKPEYKGQQ AEVLRQIEQL LFERYHITHT TLQAECTRCV DGPVIKDLRH 300
  301 RPRHGQSHDD HHHAHAHCTH GPHGHHHGHS H

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	36	0.94
Non-Cytoplasmic	37	44	0.75
Transmembrane Helix	45	67	0.88
Cytoplasmic	68	81	0.88
Transmembrane Helix	82	101	0.93
Non-Cytoplasmic	102	115	0.81
Transmembrane Helix	116	138	0.89
Cytoplasmic	139	148	0.88
Transmembrane Helix	149	170	0.93
Non-Cytoplasmic	171	176	0.70
Transmembrane Helix	177	198	0.90
Cytoplasmic	199	331	0.99