YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982331, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKTRIAITG LGIFCAAGKD LASFTDALLH GRCGIGPVDL FDVSPFPSHI GAQVRDYSPL  60
   61 DYFDRADARR LSRTDQFAAV AAAEALGMSG AREHYDPFTV GICVGAGASG MIHGEAWLRD 120
  121 RLAGGKGRPG DLRCILPDRT TTALAERFGL WGYQGSITTA CSSSATAIGW GADLIATGQL 180
  181 DACLCGGSDT LSILTYAGFN SLRVVDPEPC SPFSLGRQGI SLGEGAAFVV LEREETARSR 240
  241 GARIYGRVLG YALAGEAHHM TAPEPSGSEA ARVMRAALDN AGVSAGEIGW VNAHGTGTPL 300
  301 NDVVESKAMK LVFGADVQHV PLVSTKGMTG HCLGAAGSIE IVATVTALGA GIIPRTLNFR 360
  361 GSDPECDLDY CHDGPRESSA TVALSNSFAF GGNVTSVVIG R

Type	Start	End	Confidence
Signal Peptide	1	18	0.63
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	401	0.87