YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982310, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	49	0.79
Transmembrane Helix	50	72	0.85
Cytoplasmic	73	86	0.96
Transmembrane Helix	87	111	0.87
Non-Cytoplasmic	112	117	0.66
Transmembrane Helix	118	137	0.90
Cytoplasmic	138	142	0.88
Transmembrane Helix	143	163	0.94
Non-Cytoplasmic	164	170	0.81
Transmembrane Helix	171	191	0.95
Cytoplasmic	192	211	0.84
Transmembrane Helix	212	234	0.81
Non-Cytoplasmic	235	239	0.62
Transmembrane Helix	240	259	0.89
Cytoplasmic	260	270	0.82
Transmembrane Helix	271	293	0.87
Non-Cytoplasmic	294	298	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSEEGLEKG MFAKIRVFLE MIKFSHTVFA LPFAFTGAVL AADGMPSAHQ VFWILMAMVG  60
   61 ARTAAMGMNR LIDAEIDARN PRTASRAIPA GLIGTGTVAL FIVLSILLML YAAWQLNPLC 120
  121 LYLSPVALFF LGLYSYCKRF TSLAHVVLGI CLAAAPLGAW IAIRGTVEVP AILLGLAVLF 180
  181 WVAGFDILYA LQDLDFDRAS GLHSIPVRLG VNGSLWAARV FHLVMLGLLA GLYLSAGLGP 240
  241 WFLAGLAATI AMLGYEHWLL RHGDLTKLDA AFFTMNGYIS ITLFVATLAD VLAGRGGV