YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982296, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLTTPFPT ANDVAFFTLV MGRMAGIFAA IPIFGGRRVP TPIKALLVFA MTMVCFPIIK  60
   61 EKMPQLPTDV LSLGFLMVQE VLVGVSLGLL SLIIFAAVEF AGQIVSVQIG LTIVTEFDPS 120
  121 QGGQLSIMSI ILEMLATLLF LSLGMHHIFI GALVQSYDVL PLGAWHMSGA LLQFIVTTIG 180
  181 EVFVLAVRLA APVMVTLLAT SVMLGIMARS FPQMNVFFVS MPLNIGIGFI VLGLSLPLFL 240
  241 HTVQGHFGLL DEQLKTMMKL MGKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.58
Transmembrane Helix	14	35	0.91
Cytoplasmic	36	41	0.52
Transmembrane Helix	42	60	0.87
Non-Cytoplasmic	61	75	0.49
Transmembrane Helix	76	105	0.73
Cytoplasmic	106	126	0.51
Transmembrane Helix	127	150	0.84
Non-Cytoplasmic	151	161	0.53
Transmembrane Helix	162	185	0.77
Cytoplasmic	186	188	0.38
Transmembrane Helix	189	211	0.81
Non-Cytoplasmic	212	217	0.48
Transmembrane Helix	218	245	0.76
Cytoplasmic	246	264	0.51