YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982294, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVPIFKRI PFIALCVILL TASLAAAAEP LALPSVSIGV GKATKPGDVS VVLQIFFLMT  60
   61 VLSLAPGLLM MTTSFTRIAV VLSFLRHAIG TQQAPPNQII IALSLFLTFF VMAPVWQQVN 120
  121 TQAIQPYRAA QITQDEALKR AVAPMRKFML SQTREKDLAL FLNLSKLPRP RTADDIPTLT 180
  181 LIPAFMISEL RTAFQIGFLI FIPFLVVDMV VASVLMSMGM MMLPPVMISL PFKILLFVLV 240
  241 DGWGLVIGSL IKSFG

Type	Start	End	Confidence
Cytoplasmic	1	9	0.69
Transmembrane Helix	10	29	0.72
Non-Cytoplasmic	30	54	0.82
Transmembrane Helix	55	78	0.83
Cytoplasmic	79	96	0.73
Transmembrane Helix	97	116	0.87
Non-Cytoplasmic	117	192	0.81
Transmembrane Helix	193	216	0.86
Cytoplasmic	217	229	0.59
Transmembrane Helix	230	251	0.87
Non-Cytoplasmic	252	255	0.66