YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995456, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METFFFTIVA AVAVLASILV ITCKNPINSA LSLILTFFCL ATFYVMLDAP FMAAIQVIVY  60
   61 AGAIMVLIVF VIMLLNVRTE AGRRSSHTVL LGSLVGIFTL VQLFYVLNRS SLTGNKGEIS 120
  121 PELIHRIGHT EIIGKALYTD FLLPFEVTSI LLLVAIIGAV ILTKKKI

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.94
Transmembrane Helix	4	23	0.88
Cytoplasmic	24	29	0.79
Transmembrane Helix	30	47	0.93
Non-Cytoplasmic	48	56	0.61
Transmembrane Helix	57	77	0.94
Cytoplasmic	78	86	0.88
Transmembrane Helix	87	106	0.95
Non-Cytoplasmic	107	141	0.96
Transmembrane Helix	142	163	0.92
Cytoplasmic	164	167	0.93