YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982199, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTFRYSAYT AGGRETSGTI EAESLKEAKL HLKRDGLYPR DIGPVSETAG TVSRRFGGRN  60
   61 AGPAQVALMT RRLATLVGSQ VPIYEAVTTL WEQEEPGEIK KALGRIRERL AEGANLAKAL 120
  121 SLEPRLFSES YVAMVAAGEA SGALDAVLER VALFLEEQRA IRSKITASLA YPTLMVLVGS 180
  181 AVMLFLLAFV IPKIVTIFED NRAALPLITI ALIKTSTFLR SFWWACIAAV AGVVLLYRRL 240
  241 MKDDAFRLRR DRFLLRIPVV GSLLRQLILS RFAKVLGLLL SSGVPVMRAL EITAQVVVNR 300
  301 HYRAALTGVT AGLAEGGTLS GALRTTGLFP PLLVHMVAVG EKGGELEEML GKAGSAFERE 360
  361 FESSVSGLMA LLEPLLVLAM GLAVGLVVVA VLLPIFELNQ LIR

Type	Start	End	Confidence
Cytoplasmic	1	168	0.89
Transmembrane Helix	169	191	0.92
Non-Cytoplasmic	192	220	0.89
Transmembrane Helix	221	240	0.93
Cytoplasmic	241	252	0.94
Transmembrane Helix	253	269	0.52
Non-Cytoplasmic	270	274	0.31
Transmembrane Helix	275	292	0.46
Cytoplasmic	293	303	0.45
Transmembrane Helix	304	323	0.52
Non-Cytoplasmic	324	374	0.69
Transmembrane Helix	375	396	0.94
Cytoplasmic	397	403	0.68