YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982193, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYLILEWTG TDLVASRFFT RAGELVFQGR ESRPAASEAD LTAALRELAS SDDDCRPVLA  60
   61 IPLGRLFSRE IDLPIHERAK IRLLLPLELK GETALENEDL VFDGLPLAAE GKVLALWARK 120
  121 REIAHLVQAC TEAGIDPEVV TTAPIHWEEL LSSDAAEATL AVTDGTALAV YGNGKPLFFR 180
  181 ALGRDEGELS RTLAALEMAR QVRIERLFRH GSPVGNATAE AAGAPMLALP VTDSLAAAFG 240
  241 GDEAAARESA GAWALARALQ TGRIGTFRAG ELAWTRGREQ LKRQLRIPAI LTVLLLLLLA 300
  301 ADAGIRYTMV KRDLASVDAS IAALYREVFP GRKKSVDELG ELKAEIRRLG AAGAGSHILN 360
  361 TLRGLAKAKG DDVTGLFEVE IDGTAVRLKG DARSSQAVSQ YRDRLAGVLA GAEVGQITAK 420
  421 PDGSVTFSLR GTISEVAK

Type	Start	End	Confidence
Non-Cytoplasmic	1	286	0.74
Transmembrane Helix	287	307	0.71
Cytoplasmic	308	438	0.53