YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982162, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHSIVLATG GQVPERVVPN SHFSYLVDDA DTWIQSRTGI RERRFAAPDE ATSDLATAAA  60
   61 LKALDRAGMG AGELDCLIVA TSTPDMCLPA TACMVQKNIG AVNAFAFDMN AVCSGFVFGL 120
  121 ETADNFIRSG KYERVMVIGA DTYSKILDFQ DQTTCPLFGD GAGAVILGRT TERTGILQSV 180
  181 IRSDGSGWEL IQVPSSGSRK PVTAETIALR ENSFRMAGKQ VFIFATDVIP QIIEEVTTKA 240
  241 GVAVTDLDHI IPHQANYRII DFISRKTGIP KERFLLNLDR YGNTAAASVG LALDEYLRNG 300
  301 TIKPGELVLM MGFGGGLSWG GILIRA

Type	Start	End	Confidence
Non-Cytoplasmic	1	306	0.72
Transmembrane Helix	307	324	0.55
Cytoplasmic	325	326	0.30