YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39982098, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	29	0.94
Cytoplasmic	30	36	0.77
Transmembrane Helix	37	56	0.91
Non-Cytoplasmic	57	64	0.75
Transmembrane Helix	65	87	0.90
Cytoplasmic	88	107	0.84
Transmembrane Helix	108	128	0.85
Non-Cytoplasmic	129	132	0.57
Transmembrane Helix	133	154	0.75
Cytoplasmic	155	158	0.62
Transmembrane Helix	159	180	0.80
Non-Cytoplasmic	181	192	0.77
Transmembrane Helix	193	214	0.94
Cytoplasmic	215	222	0.78
Transmembrane Helix	223	241	0.89
Non-Cytoplasmic	242	247	0.85
Transmembrane Helix	248	270	0.94
Cytoplasmic	271	290	0.92
Transmembrane Helix	291	312	0.89
Non-Cytoplasmic	313	342	0.92
Transmembrane Helix	343	362	0.91
Cytoplasmic	363	381	0.87
Transmembrane Helix	382	401	0.91
Non-Cytoplasmic	402	431	0.60
Transmembrane Helix	432	455	0.83
Cytoplasmic	456	468	0.55
Transmembrane Helix	469	490	0.91
Non-Cytoplasmic	491	512	0.60
Transmembrane Helix	513	535	0.92
Cytoplasmic	536	542	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLEVIPLTL PLLLTLLPIV VILVMLLVFR KAADVSGIIG WLAISVVAWL GFQTAPEVIL  60
   61 RSTAAGFIRS FSVSLIVATS LLQMALMEKT GALRRITIFI RTIASDNRAV QIMMINIGFG 120
  121 TLMVAVGATP VSILPPILLA MGYSTYVAIA LPAIGYDSLC TYALLGAPIV VFVDIANSFL 180
  181 GKGNEIALHQ AGMVFYMFLP VVSTMIGFCM LWIVGKWQAI RDGWLPCLLT GAVIGVVARF 240
  241 TNQYDNLVVL TGVLCGIAVI AAMAAYLVVT GGKVIDRSLL SAEEREFAAA MPLWRAFMPW 300
  301 TLLVILILVL NVPQDLFSWL YRTMKLPIAG LTADGKPLDT RALWQAYTWI LVSTILAVPF 360
  361 LKPTGEQLRE TVRTWVRRAP RPVFAAAVFF AIGEIMNMAG YDMAAGRFVV PSMVTVLADS 420
  421 SALAFQGMYG EVVAFIGLFG GFITGSEAST IAMFAKYTMT TAKNLDMPLS GLIIVTAGLA 480
  481 FGGGLASVIS PAKLQNAAAA IDRIGEEGKV IRIAFVFALL LTLVTSLFVV VLLTVNGMGR 540
  541 VS