YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COXX_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRQDLVLFR PRLALLNGIA AVAGHALVPD AAHATLWVAL AGVAILAAGG SALNQVLERD  60
   61 LDRLMERTRQ RPLPRGDLSP AMATALGCAC IGTGLLVLAA GGPVPPLLGA VALAWYLAVY 120
  121 TPLKRRTSLA LAIGAVSGAL PPVIGWTLAG GAPGDYRIIL LAGIFFLWQV PHFWLFQRRH 180
  181 ADDYRRAGIP LFTPGAGRLG PSFHVRLWLG ALAASVLLLP AFGLMAPRMA PWIAAVPLLL 240
  241 LPVCRPRSEA TLFSCLNAFP PLMALALLLR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.97
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	35	0.76
Transmembrane Helix	36	57	0.96
Cytoplasmic	58	77	0.94
Transmembrane Helix	78	98	0.95
Non-Cytoplasmic	99	103	0.69
Transmembrane Helix	104	120	0.94
Cytoplasmic	121	128	0.76
Transmembrane Helix	129	149	0.95
Non-Cytoplasmic	150	157	0.75
Transmembrane Helix	158	176	0.98
Cytoplasmic	177	204	0.92
Transmembrane Helix	205	226	0.88
Non-Cytoplasmic	227	249	0.69
Transmembrane Helix	250	269	0.82
Cytoplasmic	270	270	0.77