YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995330, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHATHRDYA GAKLGMWLFL FTEMLLFGGL FILYAVYLHR YPAEFAAAGH RLDLVLGTAN  60
   61 TVILLTSSLL AALAVTAVQR DEGRVAFRAL GGTILCAGLF LGIKYAEWSA KISHGIYPGS 120
  121 PDLAAGPPGE SVFFGLYYLT TGLHGLHVLI GGVLLTVVAR RVKGGRVHAG DYIWLENGAL 180
  181 YWHLVDLVWI FIFPLYYLML

Type	Start	End	Confidence
Cytoplasmic	1	15	0.92
Transmembrane Helix	16	38	0.92
Non-Cytoplasmic	39	54	0.93
Transmembrane Helix	55	77	0.91
Cytoplasmic	78	84	0.90
Transmembrane Helix	85	106	0.91
Non-Cytoplasmic	107	135	0.95
Transmembrane Helix	136	159	0.89
Cytoplasmic	160	178	0.90
Transmembrane Helix	179	198	0.93
Non-Cytoplasmic	199	200	0.83