YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39981989, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLYLAIG AVVAYGIYIA ISLMFLPSVA ELKNRRTTMT IQVKDWHGEY HPFTVGPKNR  60
   61 YWTPSGSIPP EMKWAVILAE DANFYKHEGI DVKAIKNAIK YDLEKKSFAR GASTITQQVA 120
  121 KNLFLSREKT ISRKIKEIVL AKRMEEELTK GRIIELYLNV VELGPMVYGI GHGARYYFGK 180
  181 PASALTPREC AFLAAMLPGP RVAYNPYKNL GKVLKRSDMI LRLLRGKGVL SDDEYRQALA 240
  241 QTPNIAGLQR KVDASIEKEE TTFENRTGAT VPLEPQSTTA PDEQAPEEVP AASSQPAANG 300
  301 EPAAGDGGEQ QSPPPAR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.57
Transmembrane Helix	7	26	0.77
Non-Cytoplasmic	27	317	0.86