YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39981901, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLFAGTGLV VKLVLVVLIF FSVVSWAIIF FKLLQINRAN GESDRFLDFF WKTKRFDAIS  60
   61 SQLDRFGNSP LSVLFNEGYA ELRRLLDKGG EQRDEPGVVS TDLGGIDNIA RALRRATTSE 120
  121 ITRLEKYVTF LATTGSTAPF IGLFGTVWGI MNAFKGIGET GSASLAVVAP GIAEALIATA 180
  181 IGLVAAIPAV MAYNHFQHKI KVLIASMDNF STEFLNIVQR TFAGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.94
Transmembrane Helix	8	30	0.89
Cytoplasmic	31	126	0.95
Transmembrane Helix	127	150	0.88
Non-Cytoplasmic	151	170	0.82
Transmembrane Helix	171	193	0.88
Cytoplasmic	194	225	0.93