YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995123, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAIVAGGG ISGLATAYLL KTRAAEEGLE LDVTLVEREE RLGGKIWSIK EEGYLCEWGP  60
   61 NGFLDSKPQT LDLCRELGAS DLLLRSNDNA RKRFIYTGGA LNRLPENGPM FLKSGLISWP 120
  121 GKLRLAMEPF IPKKAGDEDE TLAAFGRRRL GDEALRKLIA PMVSGIFAGN PETMSLRSCF 180
  181 PRIAELEDEY GSLVRAMIRL AKKKKQEVAQ GKAVASAAGP GGVLTSFRDG IQALTDILAE 240
  241 RLGPDTIVSG QEVLEVSRGG SLPWRVRTGS IDMDADLVIL ATPAYATASI IQGVDSDMAG 300
  301 ILRQIPYATM TVVCFGYDRE RIAHDLNGFG YLIPKEEGMN TLGTLWDSSI FENRAPEGQV 360
  361 LLRSMMGGAC FPEYVNLTDE EVTGRVKNDL ATIMGITAPP SFVRIFRHHQ AIPQYTVGHS 420
  421 TRVAALEQRA ASLPGLFLTG NSYRGIGLND CVAAANRTAG EAIAQLTSR

Type	Start	End	Confidence
Signal Peptide	1	17	0.94
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	469	0.99