YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28921919, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADALVYHP AVSHYLKFVA TTVGRDKLLR LLQYFARFYA WYLLRTNKPA SAIQPWETMK  60
   61 KQFGLVRKVM RAGKNVEHIK AAAVAADSKN GDPILRYLAV GRQLGYAGYL TFDLGTLLDA 120
  121 TGIRKTESAK RLARESQRFW VMGLSCSVIA QAYTLWRLRQ REARVDRKEG EGVVEAKRIE 180
  181 VERAASRIQL TSDLCDLTVP LSALAWVNFD DGIVGLAGTL SSLLGIYTQW KKTA

Type	Start	End	Confidence
Cytoplasmic	1	137	0.63
Transmembrane Helix	138	156	0.75
Non-Cytoplasmic	157	211	0.77
Transmembrane Helix	212	230	0.47
Cytoplasmic	231	234	0.55