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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85097040
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPIASHWTP SHQHSNSLGQ RSEMRQSTSF DSRDSRPTSP HNVSSPVTYR PMDPQNFLSV  60
   61 PGAAGRSRQN SVNSNDETRS IASSQGETVI GGSSHQGDKI GRPLSSNTSD NAQIMNDPDA 120
  121 LKPDQGREAD FEVVDNPFAY TPGQLNKMFN PKSLSAFWKL GGLAGLEKGL RTDRKAGLSM 180
  181 DEVEVDGRVT FDEATARPSG NPPAQPKAAT ETVLAKTDSH AAADHHKKHH GDDHYTSRKR 240
  241 VFSDNRLPEK KGKSLLELMW ITYNDKVLIL LSIAAVVSLA IGLYQTFGQA HKPGEAKVEW 300
  301 VEGVAIIVAI VIVVMVGSLN DYQKERQFAK LNKKKQDRLV KAIRSGKTVE ISVFDVLVGD 360
  361 VLHLEPGDMI PVDGILIEGY NVKCDESQAT GESDIIRKRP ADEVYAAIEN NENVKKMDPF 420
  421 IQSGARVMEG MGTYLVTSTG IYSSYGRTLM ALDEDPEMTP LQSKLNVIAE YIAKLGGAAG 480
  481 LLLFIVLFII FLVKLPKSQH TPAEKGQQFL NIFIVVVTII VVAVPEGLPL AVTLALAFAT 540
  541 TRMLRDNNLV RHLKACEVMG NATTICSDKT GTLTQNKMQI VAGTVGTTHR FGGVGSAGGL 600
  601 NPETPDSPTE ADVTAKEVVA SLDASVKELL LKSISLNSTA FEGEIDGVKS FVGSKTETAL 660
  661 LEFAKEHLAM GPIAEERANA KILHLIPFDS GRKCMGVVVA LDNGKARLYV KGASEIMLEK 720
  721 CTQILRDPSN GITAGPLTQE NRETVLKLIE TYARNSLRTI GIIYRDFAHW PPAKARRTGE 780
  781 DKEEIVFEDI CSQMTFVGMV GIKDPLRPGV PEAVQLCQKA GVVVRMVTGD NKITAEAIAK 840
  841 DCGILQPNSL VMEGPEFRNL SKAKQEEIIP RLHVLARSSP EDKRILVKRL KDMGEIVAVT 900
  901 GDGTNDAPAL KMADVGFSMG IAGTEVAKEA SAIILMDDNF NSIVKALKWG RAVNDAVKRF 960
  961 LQFQLTVNVT AVILTFISAV SNKEQDSVLT AVQLLWVNLI MDTLAALALA TDPPADSVLD1020
 1021 RKPERRGSGI ISTTMWKMII GQAIYQLAIT LLIYFGKQGV LPNYDDNVTD DQIQTLVFNT1080
 1081 FVWMQIFNQW NNRRLDNNFN IFEGLTKNLF FLGISAIMMG GQVLIVFVGG QAFSIAKEKQ1140
 1141 TGAMWAYALI LGFISIPVGM IIRLIPDSLF ERMVPEYIKR RANKTPDLTV SDDERFEYYP1200
 1201 PAFAEVRDEL AFLKQFKGGR INNLKFAMKH PRETFMPKRS ASHSRSNSKS NSINVPMTPI1260
 1261 RKDSTGGAPS IAPPTPDSRR RSRSTRSRSN SALGASMVMT GIIAGSVAAG WAPSPVERRP1320
 1321 DSDFGLFPPK SSPHAESSQS EVQPSQRSLT PSINEEQETP DIVPSIVEQT VPILSVPKPP1380
 1381 GQKSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle