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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28920245, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPYPQGPPA GRRVSKRSVS EIQKLRVGTF IEPSTGERFR RTFTLRLPLR RRSVQAALNG  60
   61 NGTSANTAIL PVFSDQQSLS ERSHAVAHNL RAGVVRGFQW LNSPTGRGVL KCTLAYTIAS 120
  121 LATFLAPISD FLGKPDGKHV VATITVYFHP ARSAGSMIEA ILIAIVAVAY AQVVSILSMC 180
  181 TSVLFGNVWG NPALAHTLVL VVFIGGGFGF IGWLKQTMNN PLVNVGSTLA SLAIIGVVTK 240
  241 ETAVLTSVFS NQKIIQILKM LAMGITTTTV VNLLVWRVSA VHLLRQSMTK TSTALGDMLA 300
  301 MITHGFLSGA EDELLSKEFN AASAAYQSAY PQLTKNLREA KFERYFLGQE KIYQLDRAVV 360
  361 KSMETLAQSI GGLRSAANTQ FALLKESFEQ ADQPPLSPRM QRAASTILKS GKDRSLVLQA 420
  421 IREASDEGDD EDDDRVPPKS DTRRSDVSTV PSFRNSGEIF ELFIALLGPS MKSLAYTLSE 480
  481 VLRDPPFGSA PKYEIMINDQ FRQSLTDALG LFNDARAKAL HELYKHLEMD RTRSEQIQAD 540
  541 FEEVAAACGH FSFSLQSFAE EMQKYLDVLD DLKHESQFKR RSWHWLVWWR SKHHHSRFFP 600
  601 ALPYNQVPEE QEGLIRPIKK TAIPKGIPDS MVQRRDTYNW EAAKSQSSRV VATLSQKLLR 660
  661 FMRRLARDDV RFGLKVGIGA ILWAMNAFIP QTRDTYQHWR GEWGFLSFMI VCSMTVGAAN 720
  721 TTGWARFLGT MIGAGAAYVN WNVTQGNALG LIVLGWLMAF WSFWMMIARG QAPLGRITLL 780
  781 AYNVSTLYAY SLSQKVDDDD DDEGGMHPII GEIVWHRFIA VTAGILWGLI VCRLIWPISA 840
  841 RKKFQQGLSM LYLQMGLIWK RGPLAILLRS DCSRSYLKSG EMTALKKYAT RLDALRASAA 900
  901 SEFELRGPFP AAQAGRLMQC ANRLLDAFYA MSLVTQRRGH LTEGERALLL YTAEERKALC 960
  961 DRICHVFQVL ASSLMLEYPL TDAIPSVLGQ RDKLLAKIFR FRKEHMPCRT LQSISVDGDR1020
 1021 DRDSVTTAAG RANSYVTAAS SFGQGADGSW NNSLRGSIDS LENGSGGGNI INIDNNNNDN1080
 1081 PLAHVTVEER DYALLYAYAL VTGQVAEELS EVAREIEGLF GVLDKESILL Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle