YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85090151
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFSQFRDR GSGISPFMPS PAPTPSLLST LSGPLIFLLR LPFFVLYTIS YFLLLPLLPS  60
   61 PLRKLLLWGF FALTGTWWSD LQLDGVKRGS LSQQPPSRIP RGGTVIAANF TSPLDAVYLA 120
  121 AVWDCVFVQS FPGSRQVRRL SLWQAISLAL SPRQLAGPPA GDSEKLTTIA QLLKDYPTRA 180
  181 IAVFPECATT NGKGILPLSP SLLTVPSSTQ IFPLSLRYTP VDDTTPVPGG VKVWLSFLWK 240
  241 LLARPTHCIR IRIGEGLVNT VGASNGVSHG ESSGVDVRER QEGGDGELTA EEQRLLDKVA 300
  301 ETLARLGRAK RVGLTVEDKK NFVKAWEKRR R

Type	Start	End	Confidence
Cytoplasmic	1	20	0.56
Transmembrane Helix	21	35	0.40
Non-Cytoplasmic	36	36	0.14
Transmembrane Helix	37	58	0.77
Cytoplasmic	59	64	0.42
Transmembrane Helix	65	81	0.72
Non-Cytoplasmic	82	331	0.65