YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37200105, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEHVVKLH LLKRLADGQF HSGETLGHEL GISRAAISKH INALQDWGVD VYRIQGRGYQ  60
   61 LAQPMTLLDE HQLVEQSANS VELIPVIDST NQYLLERIEN LQTGHVCLAE YQSQGRGRRG 120
  121 RQWFSPFGSN LYMSMYWRLD AGMAAAMGLS LVVGIAAVEA LETLGVQGVK LKWPNDVYYQ 180
  181 DKKLAGILVE MTGQAGGAAH LVIGMGLNMQ MQADCHSIDQ PWTALSQIES GARLDRTELA 240
  241 LTLMAKWREA LSEYEQCGLN GFIERWNRLD NFKGRQVKLL IGPREIHGEV QGIDSQGGVI 300
  301 LKTVEGIQTF VGGEISLRAN DQ

Type	Start	End	Confidence
Cytoplasmic	1	138	0.76
Transmembrane Helix	139	158	0.73
Non-Cytoplasmic	159	322	0.63