YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DSBD_VIBVY
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	197	0.99
Transmembrane Helix	198	220	0.88
Cytoplasmic	221	239	0.79
Transmembrane Helix	240	262	0.89
Non-Cytoplasmic	263	271	0.84
Transmembrane Helix	272	294	0.92
Cytoplasmic	295	316	0.88
Transmembrane Helix	317	338	0.92
Non-Cytoplasmic	339	355	0.78
Transmembrane Helix	356	376	0.94
Cytoplasmic	377	388	0.79
Transmembrane Helix	389	406	0.94
Non-Cytoplasmic	407	414	0.70
Transmembrane Helix	415	433	0.95
Cytoplasmic	434	444	0.86
Transmembrane Helix	445	468	0.87
Non-Cytoplasmic	469	598	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLTFFVA GLLVLSSPAM ALFGNNQNSS FASGSNDFVP VDQAFPFNYF QQDHRITLDW  60
   61 QVKEGYYLYQ QRLSFSAENV VLGDIQMENG QPYRDEFFGD VNIYTNPLFV NIPMQDWQPG 120
  121 AKLIVQYQGC AKAGFCYPPE TRVIDIASFT NGDMAPATMP TQTASPLDTS TANTSTPQPL 180
  181 TQQDQLASGL ADNWWTPLLF LALGVGLAFT PCVLPMYPIL TSIVLGSGKL SQRRALGLSL 240
  241 VYVQGMALTY TLLGLVVASA GLQFQAAMQH PYVLIGLSIL FVTLALSMFG VYTLQLPSSV 300
  301 QTWLNNLSNK QQGGSSTGVF AMGAISGLVC SPCTTAPLSG ALLYVAQSGD LLTGGVALYA 360
  361 LAMGMGIPLI LVAVFGNKLL PKAGGWMDHV KTLFGFVLLA APIFLLERIL PEMWSTALWS 420
  421 ALGIAAFGWL YHVKNSLEFG GWKQSAVGII AVLGLFASAQ PALNYWFADS SQQAQTSEVS 480
  481 FIKIRNVEEL QQQLALAKQA KKPVMLDFYA DWCVACKEFE KYTFHDPAVA AQLKQFVLLQ 540
  541 ADVTRNQAQD IELLQAQQVL GLPTIDFWDA QGNPVSNARL TGFMQAAPFL EHIQRISN