YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37199215, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.90
Transmembrane Helix	26	51	0.81
Cytoplasmic	52	63	0.94
Transmembrane Helix	64	85	0.90
Non-Cytoplasmic	86	105	0.85
Transmembrane Helix	106	128	0.92
Cytoplasmic	129	136	0.95
Transmembrane Helix	137	157	0.95
Non-Cytoplasmic	158	197	0.92
Transmembrane Helix	198	218	0.94
Cytoplasmic	219	228	0.81
Transmembrane Helix	229	248	0.94
Non-Cytoplasmic	249	398	0.99
Transmembrane Helix	399	419	0.94
Cytoplasmic	420	430	0.85
Transmembrane Helix	431	454	0.88
Non-Cytoplasmic	455	480	0.91
Transmembrane Helix	481	504	0.85
Cytoplasmic	505	538	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSRHIGVT MIDVVDLSRL QFALTAMYHF LFVPLTLGMA FLLAIMESLY VMTDKQIYKD  60
   61 MTKFWGKLFG INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEA LVAFFLESTF 120
  121 VGLFFFGWER LSKRQHLAVT WLVALGSNFS ALWILVANGW MQNPVGAEFN FETMRMEMVS 180
  181 FAEVVLNPVA QVKFVHTVAS GYTTGAMFIL GISSYYLLKG RDVAFARRSF AIAASFGMAS 240
  241 ILSVIVLGDE SGYELGEVQK VKLAAVEAEW HTEPAPAAFT LFGLPNQETM HTDYAIKIPY 300
  301 VMGIIATRSF DEQVTGLRDL RDQHVDRIRN GMYAYELLEK LRAGDRSEAN KAAFDEVKGD 360
  361 LGYGLLLKRY TDKVTDATEE QIQAAADDSI PTVWPLFMSF RIMVGCGFIM LFVFGAAFVQ 420
  421 TCRQKIEQKP WILKAALFSI PLPWIAIEAG WFVAEYGRQP WAVGEILPTH VAASALTIGE 480
  481 LWTSLFAILA LYTVFLIAEV YLMLKFARKG PSSLKTGRYH FEQNGESIED KVNRQVEA