YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37679397, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFCLDCGQ FNRQEHFCHM KQILDFIPLI IFFALYKMYD IYVATGALIA ATAIQIVVTY  60
   61 ALYKKVEKMQ LITFLMVAIF GGMTIFLHDD NFIKWKVTIV YAVFAIGLTV SHVMGKSAIK 120
  121 GMLGKEITLP ESVWANINWA WVGFFTFCAG LNIYVAYQLP LDVWVNFKVF GLLAATLVFT 180
  181 VLTGGYIYKH LPKEQNGQSS DVPTDE

Type	Start	End	Confidence
Cytoplasmic	1	16	0.77
Transmembrane Helix	17	36	0.68
Non-Cytoplasmic	37	40	0.79
Transmembrane Helix	41	63	0.90
Cytoplasmic	64	70	0.85
Transmembrane Helix	71	88	0.97
Non-Cytoplasmic	89	96	0.80
Transmembrane Helix	97	116	0.93
Cytoplasmic	117	136	0.86
Transmembrane Helix	137	157	0.94
Non-Cytoplasmic	158	166	0.81
Transmembrane Helix	167	188	0.91
Cytoplasmic	189	206	0.95