YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37679371, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEATMSEHKK LLKNGMWDNN PALVQLLGLC PLLAVSSTVT NALGLGIATL LVLVGSNVTV  60
   61 SLIRNYVPKE IRIPVFVMII ASLVTCVQLL MNAYAYGLYL SLGIFIPLIV TNCIIIGRAE 120
  121 AYASKNDPLP AALDGFWMGM GMTTVLVVLG AMREIIGNGT LFDGADLLLG EWASALRIQV 180
  181 FQFDSSFLLA LLPPGAFIGV GLLIALKNVI DTQLKARQPK QEKPAIERAR VTNA

Type	Start	End	Confidence
Cytoplasmic	1	16	0.87
Transmembrane Helix	17	35	0.83
Non-Cytoplasmic	36	42	0.60
Transmembrane Helix	43	63	0.90
Cytoplasmic	64	72	0.78
Transmembrane Helix	73	91	0.95
Non-Cytoplasmic	92	97	0.65
Transmembrane Helix	98	119	0.87
Cytoplasmic	120	132	0.86
Transmembrane Helix	133	152	0.92
Non-Cytoplasmic	153	186	0.89
Transmembrane Helix	187	210	0.87
Cytoplasmic	211	234	0.98