YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37197767, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDKFIKSR AAVAWGPKQP LSIEEVDVML PRKGEVLVRI VATGVCHTDA FTLSGDDPEG  60
   61 VFPAILGHEG GGIVEMVGEG VTSVSVGDHV IPLYTAECGQ CKFCLSGKTN LCQAVRETQG 120
  121 KGLMPDGTTR FYKDGKPIFH YMGCSTFSEY TVLPEISLAK VNKEAPLEEI CLLGCGVTTG 180
  181 MGAVINTAKV KQGDTVAIFG LGGIGLSAII GARMAGASRI IAVDINDRKF ELAKQLGATD 240
  241 CINPKEHDQP IQEVIIEMTD GGVDFSFECI GNVNVMRQAL ECCHKGWGES VIIGVAGAGQ 300
  301 EISTRPFQLV TGRVWRGSAF GGVKGRSQLP AIVEQYLAGE FGLQEFITHT MPLEGINDAF 360
  361 ELMHSGESIR SVVHFE

Type	Start	End	Confidence
Cytoplasmic	1	169	0.57
Transmembrane Helix	170	188	0.47
Non-Cytoplasmic	189	195	0.78
Transmembrane Helix	196	216	0.60
Cytoplasmic	217	376	0.53