YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37678885, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKARRFGF FIMCNLFFTF DVFYCLRLIF NSTLLTCVQT DFDSQGYEGV KNNIQVSVMQ  60
   61 KSELSNINIS DEQVLITPEQ LKQKLPLSDN ARRFIQESRN TVANIIHKQD HRLLVVCGPC 120
  121 SIHDLDAAKD YARRLKALSA ELSDQLYIVM RVYFEKPRTT VGWKGLINDP HLDGSFDIEH 180
  181 GLHVGRQLLV ELAEMEIPLA TEALDPISPQ YLADTFSWAA IGARTTESQT HREMASGLSM 240
  241 PIGFKNGTDG SLSTAINAMQ AASSSHRFMG INREGQVALL TTQGNPNGHV ILRGGKQTNY 300
  301 DSVSVAECEQ DMAKVGLDAS LMVDCSHANS RKDYRRQPLV AEDVIHQIRE GNKSIIGLMI 360
  361 ESHINEGNQS SDLPLSEMQY GVSITDACIN WQATEALLRK AHKELVPHLE NRLK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	30	0.85
Non-Cytoplasmic	31	414	0.99